TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

ath-miR5021

Organism

Arabidopsis thaliana

Species

Mature miRNA Sequence(5'-3')

UGAGAAGAAGAAGAAGAAAA

miRBase

Precursor miRNA Sequence(5'-3')

GUAGUGAUGAUGAAUUUGAGAUUUGGGAGAGGGAGAGGAUUGAGAAGAAGAAGAAGAAAAGAGUGAUUUGAGAGUUCAUGGGUCUUGAAAGAUUUUAGUGACUUUCGUUAUCUUCCUUGUUGUUGUUCUUCUUCUCUAAUAAGUUCUUCAAUGGAGUUUUGUCGUCUCUAU

miRBase

Precursor miRNA Structure(5'-3') 

    U      GAAUUU       G GA      GAGG   -           G  G  -   AGU   -U       U   --      U 
GUAG GAUGAU      GAGAUUU G  GAGGGA    AUU GAGAAGAAGAA AA AA AAG   GAU  UGAGAGU CAU  GGGUCU G
|||| ||||||      ||||||| |  ||||||    ||| ||||||||||| || || |||   |||  ||||||| |||  ||||||  
UAUC CUGCUG      UUUUGAG U  CUUCUU    UAA CUCUUCUUCUU UU UU UUC   CUA  GCUUUCA GUG  UUUAGA A
    U      ------       G AA      -GAA   U           G  G  G   CUU   UU       -   AU      A

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

ath-miR838         UUUUCUUCUACUUCUUGCACA
aly-miR838-3p      UUUUCUUCUUCUUCUUGCACA
ath-miR5021        -UGAGAAGAAGAAGAAGAAAA
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