TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

ath-miR4239

Organism

Arabidopsis thaliana

Species

Mature miRNA Sequence(5'-3')

UUUGUUAUUUUCGCAUGCUCC

miRBase

Precursor miRNA Sequence(5'-3')

UCUUGUUUGCACAUUUUGUCUUUGUUAUUUUCGCAUGCUCCUUUGAAACUUUUUGUGCAUGGAUGUGAAACUCUUCACUGGAGCAUACGGCGAUAACGAAAACAAGGUGUGCAUAUAAACUUU

miRBase

Precursor miRNA Structure(5'-3') 

---UC    U            C         U   C       UU    ACU    GU   U 
     UUGU UGCACAUUUUGU UUUGUUAUU UCG AUGCUCC  UGAA   UUUU  GCA G
     |||| |||||||||||| ||||||||| ||| |||||||  ||||   ||||  |||  
     AAUA ACGUGUGGAACA AAGCAAUAG GGC UACGAGG  ACUU   AAAG  UGU U
UUUCA    U            A         C   A       UC    CUC    --   A

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

aly-miR4239      UCCGUUAUUUCCGCAUGCUCC
ath-miR4239      UUUGUUAUUUUCGCAUGCUCC
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