TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

ath-miR158a-5p

Organism

Arabidopsis thaliana

Species

Mature miRNA Sequence(5'-3')

CUUUGUCUACAAUUUUGGAAA

miRBase

Precursor miRNA Sequence(5'-3')

ACACGUCAUCUCUGUGCUUCUUUGUCUACAAUUUUGGAAAAAGUGAUGACGCCAUUGCUCUUUCCCAAAUGUAGACAAAGCAAUACCGUGAUGAUGUCGU

miRBase

Precursor miRNA Structure(5'-3') 

-AC        U U   CUU           A   U     A       A 
   ACGUCAUC C GUG   CUUUGUCUACA UUU GGAAA AGUGAUG C
   |||||||| | |||   ||||||||||| ||| ||||| |||||||  
   UGUAGUAG G CAU   GAAACAGAUGU AAA CCUUU UCGUUAC C
UGC        U C   AAC           -   C     C       C

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

ath-miR158a-5p      CUUUGUCUACAAUUUUGGAAA
aly-miR158b-5p      -UUUGUCUACAAUUUUGGAAA
aly-miR158a-5p      CUUUGUCUACAAUUUUGGAAA
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