TarDB

Precursor miRNA Sequence(5'-3')

CUCAAAAUUUCUAAUAUUUUCGACUGCUACAACAAACUUUCACCAUACAAAAUAAUCAAGAAAAACACUCAAAAAGAUUGAAUGUGUGAGGUUAGUCUCAUUAACGGAAUUGUGAACAAUUUUGUUAAAAAAUAGUGACUUGGUUUUCAAAUGUAUUUUUUUAAAGAAUAAUGUUUUUUAGCUUUUUAUUAUAUAUCAACAUGAGACCUCAGGUAACAAGGUAAAAGAGACAGAAAAAUAAAAAAAUUUAAUUUUUUCAAGUUUAUAGUUUAUAGUAAAGAAGUUUUUUUUUUUUUUGAAAAAUAUAUUUUAAAACAGUGUCACUAUUUUAAACGGCAAAUGGACAUUUCUAUUAAUGAGAUUAAUGUCGAGCAUUUGGAUUUCUAUUUGAGUACUUUUUGUUUCUAAGUUAUUUUGUAUGUUGAAGGUGUAUUGUAGGAAUCGGAAACAUCAACUCUCAAGAUUUUUAUGAG

miRBase

Precursor miRNA Structure(5'-3')

    -   UU   --------AAUA       C G      CAA       C             CA     -----AAC       A   ---        G   G              C    UU   AA  AU      --AA           UUG     C             U      UAAUGUUUUUU        -      ---   C   A   GACCUCAGGUAACAAGGUAAAAGAG 
CUCA AAA  UCU            UUUUCGA U CUACAA   ACUUUCA CAUACAAAAUAAU  AGAAA        ACUCAAA AGA   UUGAAUGU UGA GUUAGUCUCAUUAA GGAA  GUG  CA  UUUGUU    AAAAUAGUGAC   GUUUU AAAUGUAUUUUUU AAAGAA           AGCUUUUU AUUAUA   UAU AAC UGA                         A
|||| |||  |||            ||||||| | ||||||   ||||||| |||||||||||||  |||||        ||||||| |||   |||||||| ||| |||||||||||||| ||||  |||  ||  ||||||    |||||||||||   ||||| ||||||||||||| ||||||           |||||||| ||||||   ||| ||| |||                          
GAGU UUU  AGA            AAAGGCU A GAUGUU   UGGAAGU GUAUGUUUUAUUG  UCUUU        UGAGUUU UCU   GGUUUACG GCU UAAUUAGAGUAAUU UCUU  UAC  GU  AAACGG    UUUUAUCACUG   CAAAA UUUAUAUAAAAAG UUUUUU           UUGAAGAA UGAUAU   AUA UUG ACU                         G
    A   UU   ACUCUCAACUAC       A G      AUG       U             AA     GUUUUUCA       A   UUA        A   G              A    --   AG  --      CAAA           UGA     U             U      ------UUUUU        A      UUG   U   A   UUUUUAAUUUAAAAAAAUAAAAAGA

TarDB: A miRNA Target Database in Plants.

TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.

miRNA ID

Organism

Mature miRNA Sequence(5'-3')

Precursor miRNA Sequence(5'-3')

Precursor miRNA Structure(5'-3')

Homologous Mature miRNAs miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.