TarDB

Precursor miRNA Sequence(5'-3')

UUUAUUUGAAUUUUAUGUGGAUAUUGGCAGUUUGAGAUUAACCAUCUCAAUAACAAACAUCUUGAAUGUGUUGAGGUUGAUCACGAUGAUGCCACGUCCGGUUUCAUUCAGGGACUUCAAUUCAGAACCAACUUCAUGGUUUUUGAACUAAUUGGAUAUGAUAAAUGGUACCAAGUUUUCACUUGCAUUCAAGGGACAUAUAUCAUUGGGUUUUUACUUUUAUGGAUAUAUGACUAUGACAUACACGAUUAGAAGCUAAAGGUUGCGGGAGGCAAGCAGUGGGAUAAUGAUCUGCAAGUGGAACUUCUUACUUUUAUCAUAUCCCAUCAGCUCGAAAGUCUUGAUGUUAGUUUUGAAUUGAAGUGCUUGAAUUAGACCAGAUGAAUAGUCAGUAGUCACAACCCUCUACAUAUAUGAGAUCUUCAGGCGUUGAGAAGAUUAAUCUCAAAACUGUAACAGAAAAGUUGGUGGA

miRBase

Precursor miRNA Structure(5'-3')

UUUAUU G      A G  GAUAUUG       -        C A       AA -AAAC      A      U    -   AUC  -GA    GCCA    C     C       G               C   U   U         A  A  U            U    CC      U        UUCAAGGGACAUAUAUCAUUGGGUUUUUACUUUUAUGGAUAUAUGACUAUG 
      U AAUUUU U UG       GCAGUUU GAGAUUAA C UCUCAAU  C     AUCUUG AUGUGU GAGG UUG   AC   UGAU    CGUC GGUUU AUUCAGG ACUUCAAUUCAGAAC AAC UCA GGUUUUUGA CU AU GGAUAUGAUAAA GGUA  AAGUUU CACUUGCA                                                   A
      | |||||| | ||       ||||||| |||||||| | |||||||  |     |||||| |||||| |||| |||   ||   ||||    |||| ||||| ||||||| ||||||||||||||| ||| ||| ||||||||| || || |||||||||||| ||||  |||||| ||||||||                                                   C
      G UUGAAA A AC       UGUCAAA CUCUAAUU G AGAGUUG  G     UAGAGU UAUACA CUCC AAC   UG   ACUG    GUAG CCAGA UAAGUUC UGAAGUUAAGUUUUG UUG AGU CUGAAAGCU GA UA CCUAUACUAUUU UCAU  UUCAAG GUGAACGU                                                   A
--AGGU G      - G  -----AA       A        A A       CG ACUUC      A      U    C   -AC  AUG    AUAA    A     U       G               A   U   U         C  C  C            -    UC      -        CUAGUAAUAGGGUGACGAACGGAGGGCGUUGGAAAUCGAAGAUUAGCACAU

TarDB: A miRNA Target Database in Plants.

TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.

miRNA ID

Organism

Mature miRNA Sequence(5'-3')

Precursor miRNA Sequence(5'-3')

Precursor miRNA Structure(5'-3')

Homologous Mature miRNAs miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.