TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

aly-miR831-5p

Organism

Arabidopsis lyrata

Species

Mature miRNA Sequence(5'-3')

AGAAGAGGUACAAGGAGAUGAGA

miRBase

Precursor miRNA Sequence(5'-3')

AAGUGCUACAAGAAUGUAUAGUCUUAGAGUCUCAAGAAGAGGUACAAGGAGAUGAGAAGUGAAUCACUGAAACAAGUGGUUCUGGUUUGUGGAUCAGUAUGGUUUACCCAAAACACGUGUUUGGUGCUUCACUUCUAAACUCCUCGUACUCUUCUUGGGAUUCUAUGACUUACACUUGUUGAUUU

miRBase

Precursor miRNA Structure(5'-3') 

AAGUG U     AA    U    U                 G   A     AUG         U    G     A   GUUC   UUU          
     C ACAAG  UGUA AGUC UAGAGUCUCAAGAAGAG UAC AGGAG   AGAAGUGAA CACU AAACA GUG    UGG   GUGGAUCAG 
     | |||||  |||| |||| ||||||||||||||||| ||| |||||   ||||||||| |||| ||||| |||    |||   |||||||| U
     G UGUUC  ACAU UCAG AUCUUAGGGUUCUUCUC AUG UCCUC   UCUUCACUU GUGG UUUGU CAC    ACC   CAUUUGGUG 
-UUUA U     --    -    U                 -   C     AAA         C    -     G   -AAA   ---

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

aly-miR831-5p      AGAAGAGGUACAAGGAGAUGAGA
ath-miR831-5p      AGAAGCG-UACAAGGAGAUGAGG
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