TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

aly-miR829-5p

Organism

Arabidopsis lyrata

Species

Mature miRNA Sequence(5'-3')

ACUUUGAAUCUUUGAUUUGAA

miRBase

Precursor miRNA Sequence(5'-3')

UGAUUAACAAAAACAAUGAAUCAUUCUACCAAUUGACUUGUACUUUGAAUCUUUGAUUUGAACCUUUCAAAUGGUAUCAAAGCUUCUACAUCUUUGAAGCUCUGAUACCAUGUGAAGGAGUCAAAUCAAAUCUUCAAGGUACUAGUCAACUUGGCAGAGAAAAAAAUGUAGUUGGGAUUA

miRBase

Precursor miRNA Structure(5'-3') 

     AA   AA   AUGAAUCA    A    -      U          UC          AC      A         A      UAC 
UGAUU  CAA  ACA        UUCU CCAA UUGACU GUACUUUGAA  UUUGAUUUGA  CUUUCA AUGGUAUCA AGCUUC   A
|||||  |||  |||        |||| |||| |||||| ||||||||||  ||||||||||  |||||| ||||||||| ||||||   U
AUUAG  GUU  UGU        GAGA GGUU AACUGA CAUGGAACUU  AAACUAAACU  GGAAGU UACCAUAGU UCGAAG   U
     -G   GA   -AAAAAAA    C    C      U          CU          GA      G         C      UUU

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

ath-miR829-5p      ACUUUGAAGCUUUGAUUUGAA
aly-miR829-5p      ACUUUGAAUCUUUGAUUUGAA
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