TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

aly-miR827-5p

Organism

Arabidopsis lyrata

Species

Mature miRNA Sequence(5'-3')

UUUGUUGAUUGACAUCUAUAC

miRBase

Precursor miRNA Sequence(5'-3')

UACAUCUUUAACUUCCAUGAAACAUUAUAGGGUUUUUUCUCUCUUGCAACCCUUGAAUGUGUUUGUUGAUUGACAUCUAUACAUAUCGAUAAUCCUAUCGUGUUGAUAGAUCGAUUGGUUUAGAUGACCAUCAACAAACGCUUUCGUGGUUUUGCAUCGCUUCUUGAAAUCUUGAUCAUGUUUUUAGCAUCUUUGUA

miRBase

Precursor miRNA Structure(5'-3') 

UACAUCUUUAACUUCCAU       -UA         -UUCUCUCU     -C  U    U            U A      U  AU      AAUC     G 
                  GAAACAU   UAGGGUUUU         UGCAA  CC UGAA GUGUUUGUUGAU G CAUCUA AC  AUCGAU    CUAUC U
                  |||||||   |||||||||         |||||  || |||| |||||||||||| | |||||| ||  ||||||    ||||| G
                  UUUUGUA   GUUCUAAAG         ACGUU  GG GCUU CGCAAACAACUA C GUAGAU UG  UAGCUA    GAUAG G
-----AUGUUUCUACGAU       CUA         UUCUUCGCU     UU  U    U            C A      U  GU      ----     U

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

aly-miR827-5p      UUUGUUGAUUGACAUCUAUAC
stu-miR827-5p      UUUGUUGAUGGUCAUCUAUUC
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