TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

aly-miR771-5p

Organism

Arabidopsis lyrata

Species

Mature miRNA Sequence(5'-3')

UGAGCCUCUGUGGCAGCCCUC

miRBase

Precursor miRNA Sequence(5'-3')

AUUCCACAUGAGCCUCUGUGGCAGCCCUCGCAAUGAUCUCAGUAGAGUGCAUGCCAAGUUCUUGUAAAGACGUAGAUGAGGGCUCCUCAGAUGUUCAUGUCGAAU

miRBase

Precursor miRNA Structure(5'-3') 

    C        C    U  C       GCAAUGAUCUCAGUAGAGUGCAU 
AUUC ACAUGAGC UCUG GG AGCCCUC                       G
|||| |||||||| |||| || |||||||                        
UAAG UGUACUUG AGAC CC UCGGGAG                       A
    C        U    U  -       UAGAUGCAGAAAUGUUCUUGAAC

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

ath-miR771         UGAGCCUCUGUGGUAGCCCUCA
aly-miR771-5p      UGAGCCUCUGUGGCAGCCCUC-
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