TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

aly-miR4243

Organism

Arabidopsis lyrata

Species

Mature miRNA Sequence(5'-3')

UGAAAUUAUAGAUUUCGUACA

miRBase

Precursor miRNA Sequence(5'-3')

UUAAGAACCAUGAUUACAGUUGAAAUUAUAGAUUUCGUACAUGACAACAAUUUGCUCUAGUCUCACUCUCAAGAUUUUGUGGUUGUUGUUGCAGUAUUCGAGAGAAUACAUGUCAAAUAUGAGAGCAUGCAUGUCAUGUACGAAAUCUACAAUUUAAACUCUAAUUAAUGGAUGGUUCU

miRBase

Precursor miRNA Structure(5'-3') 

UUA        -----     C    G     A                  ACAAUU      AGUCUCACUCUCAAGAUUUUGUGGUUGUUG 
   AGAACCAU     GAUUA AGUU AAAUU UAGAUUUCGUACAUGACA      UGCUCU                              U
   ||||||||     ||||| |||| ||||| ||||||||||||||||||      ||||||                              U
   UCUUGGUA     UUAAU UCAA UUUAA AUCUAAAGCAUGUACUGU      ACGAGA                              A
---        GGUAA     C    A     C                  --ACGU      GUAUAAACUGUACAUAAGAGAGCUUAUGAC

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

aly-miR4243      -UGAAAUUAUAGAUUUCGUACA
ath-miR4243      UUGAAAUUGUAGAUUUCGUAC-
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