TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

aly-miR4228

Organism

Arabidopsis lyrata

Species

Mature miRNA Sequence(5'-3')

AAAGCCUUGAACGCUGUCGUU

miRBase

Precursor miRNA Sequence(5'-3')

CGGCGUGUUGUUUUAACCUAAAAGCCUUGAACGCUGUCGUUUCGCCGUCGACAACAAUCACACGCGCACACUUCCACCAUUAUCAUCUAUCCACCACACAGGUUCGUCGGAUGCGAAACGGUGGUGUUCAGGGCUUUUUUAAGGUUGCUGGAUUUUAUU

miRBase

Precursor miRNA Structure(5'-3') 

---------     UGUUGUUUUA    ---                          CG     -   AAUCACACGCGCACACUUCCAC 
         CGGCG          ACCU   AAAAGCCUUGAACGCUGUCGUUUCGC  UCGAC AAC                      C
         |||||          ||||   ||||||||||||||||||||||||||  ||||| |||                       
         GUCGU          UGGA   UUUUCGGGACUUGUGGUGGCAAAGCG  GGCUG UUG                      U
UUAUUUUAG     ----------    AUU                          UA     C   GACACACCACCUAUCUACUAUU

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

aly-miR4228         AAAGCCUUGAACGCUGUCGUU
ath-miR4228-5p      AUAGCCUUGAACGCCGUCGUU
                    * ************ ******