TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

aly-miR395e-5p

Organism

Arabidopsis lyrata

Species

Mature miRNA Sequence(5'-3')

GUUCCUCUGAGCACUUCAUUG

miRBase

Precursor miRNA Sequence(5'-3')

GUCGGAUGUUUCCUAGAGUUCCUCUGAGCACUUCAUUGGAGAUACCAUCUUUUAUCAAAUGGUUUUCUACUGAAGUGUUUGGGGGAACUCCCGGACUCAUUCGAU

miRBase

Precursor miRNA Structure(5'-3') 

        UU   UA                    U      U     CUUU 
GUCGGAUG  UCC  GAGUUCCUCUGAGCACUUCA UGGAGA ACCAU    U
||||||||  |||  |||||||||||||||||||| |||||| |||||     
UAGCUUAC  AGG  CUCAAGGGGGUUUGUGAAGU AUCUUU UGGUA    C
        UC   CC                    C      -     AACU

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

aly-miR395e-5p      GUUCCUCUGAGCACUUCAUUG
aly-miR395g-5p      GUUCCUCUGAGCACUUCAUUG
csi-miR395b-5p      GUUCCCCUGAACACUUCAUUG
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