TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

aly-miR2112-5p

Organism

Arabidopsis lyrata

Species

Mature miRNA Sequence(5'-3')

CGCAAAUGCGGAUAUCAAUGU

miRBase

Precursor miRNA Sequence(5'-3')

AUGAUGCGCAAAUGCGGAUAUCAAUGUAAAUCAGGACAACAAACCAAUAGAGGUGCUCAGCAAAAACAACAAAAUGCGAAAAGGGUUUAUCAGAAACAUUAUUUGAAACAUUGGGGUCAUGAUAUACCUUUAUAUCCGCAUUUGCGCAUCAU

miRBase

Precursor miRNA Structure(5'-3') 

                     C  U   A    G   AA   ACCAAUAGAGGUGCUCAGCAAAAACAACAAAAU 
AUGAUGCGCAAAUGCGGAUAU AA GUA AUCA GAC  CAA                                 G
||||||||||||||||||||| || ||| |||| |||  |||                                  
UACUACGCGUUUACGCCUAUA UU CAU UAGU CUG  GUU                                 A
                     U  C   A    A   GG   ACAAAGUUUAUUACAAAGACUAUUUGGGAAAAG

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

ath-miR2112-5p      CGCAAAUGCGGAUAUCAAUGU
aly-miR2112-5p      CGCAAAUGCGGAUAUCAAUGU
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