Solanum lycopersicum tRNA modification sites

tRNA_ID Type Position Ref_nt Pred_mod H1_Pval H4_Pval Data_Acc
Slycopersicum_tR104 Leu-AAG 66 A m1A|m1I|ms2i6A 9.23E-13 0.001189111 SLY3
Slycopersicum_tR106 Leu-AAG 66 A m1A|m1I|ms2i6A 2.98E-16 0.0382657 SLY1
Slycopersicum_tR106 Leu-AAG 66 A m1A|m1I|ms2i6A 3.97E-13 0.007870298 SLY2
Slycopersicum_tR106 Leu-AAG 66 A m1A|m1I|ms2i6A 1.66E-18 0.000194239 SLY3
Slycopersicum_tR112 Ser-GCT 67 C m3C 2.56E-258 8.55E-08 SLY1
Slycopersicum_tR112 Ser-GCT 67 C m3C 1.35E-233 2.67E-07 SLY2
Slycopersicum_tR112 Ser-GCT 67 C m3C 0 3.84E-11 SLY3
Slycopersicum_tR117 Ala-AGC 26 G m1G 9.01E-53 1.94E-09 SLY1
Slycopersicum_tR117 Ala-AGC 26 G m1G 4.06E-16 0.019800771 SLY3
Slycopersicum_tR119 Gln-CTG 57 A m1A|m1I|ms2i6A 2.60E-24 0.035730516 SLY2
Slycopersicum_tR122 Val-TAC 57 A m1A|m1I|ms2i6A 2.22E-26 4.07E-06 SLY1
Slycopersicum_tR122 Val-TAC 57 A m1A|m1I|ms2i6A 4.55E-39 0.007433957 SLY2
Slycopersicum_tR122 Val-TAC 57 A m1A|m1I|ms2i6A 7.44E-38 1.29E-06 SLY3
Slycopersicum_tR125 Arg-TCG 59 A m1A|m1I|ms2i6A 6.00E-156 1.64E-05 SLY1
Slycopersicum_tR125 Arg-TCG 59 A m1A|m1I|ms2i6A 1.07E-153 8.56E-05 SLY2
Slycopersicum_tR125 Arg-TCG 59 A m1A|m1I|ms2i6A 6.71E-205 5.48E-08 SLY3
Slycopersicum_tR129 Met-CAT 57 A m1A|m1I|ms2i6A 9.10E-18 0.007433957 SLY2
Slycopersicum_tR129 Met-CAT 57 A m1A|m1I|ms2i6A 5.16E-18 0.013640452 SLY3
Slycopersicum_tR13 Ser-GCT 67 A m1A|m1I|ms2i6A 3.69E-187 7.53E-14 SLY1
Slycopersicum_tR13 Ser-GCT 67 A m1A|m1I|ms2i6A 1.80E-171 3.89E-23 SLY2
Slycopersicum_tR13 Ser-GCT 67 A m1A|m1I|ms2i6A 3.18E-303 8.32E-23 SLY3
Slycopersicum_tR136 Arg-TCT 58 A m1A|m1I|ms2i6A 6.89E-47 0.000202609 SLY1
Slycopersicum_tR136 Arg-TCT 58 A m1A|m1I|ms2i6A 2.99E-56 0.000486031 SLY2
Slycopersicum_tR141 Arg-TCT 58 A m1A|m1I|ms2i6A 1.27E-41 0.001488302 SLY2
Slycopersicum_tR142 Leu-CAA 69 A i6A|t6A 3.28E-13 0.00638326 SLY1
Slycopersicum_tR142 Leu-CAA 69 A i6A|t6A 2.93E-22 0.032783296 SLY3
Slycopersicum_tR147 Ala-AGC 26 G m1G 7.96E-54 2.34E-08 SLY1
Slycopersicum_tR149 Glu-CTC 58 A m1A|m1I|ms2i6A 3.19E-146 0.00356659 SLY2
Slycopersicum_tR152 Arg-TCT 58 A m1A|m1I|ms2i6A 2.40E-36 0.000110149 SLY1
Slycopersicum_tR152 Arg-TCT 58 A m1A|m1I|ms2i6A 4.82E-24 1.53E-05 SLY3
Slycopersicum_tR153 Ser-TGA 67 A i6A|t6A 3.61E-20 0.015737578 SLY2
Slycopersicum_tR153 Ser-TGA 67 A m1A|m1I|ms2i6A 3.41E-44 4.41E-05 SLY3
Slycopersicum_tR154 Val-TAC 58 A m1A|m1I|ms2i6A 2.39E-33 1.00E-08 SLY3
Slycopersicum_tR163 Gln-TTG 57 A m1A|m1I|ms2i6A 0 1.01E-16 SLY1
Slycopersicum_tR163 Gln-TTG 57 A m1A|m1I|ms2i6A 0 4.58E-22 SLY2
Slycopersicum_tR163 Gln-TTG 57 A m1A|m1I|ms2i6A 0 1.39E-20 SLY3
Slycopersicum_tR164 Thr-TGT 57 A m1A|m1I|ms2i6A 1.05E-21 0.018880071 SLY3
Slycopersicum_tR165 Met-CAT 57 A i6A|t6A 2.23E-21 0.002923365 SLY2
Slycopersicum_tR165 Met-CAT 57 A m1A|m1I|ms2i6A 1.15E-18 6.06E-05 SLY3
Slycopersicum_tR166 Leu-TAG 65 A m1A|m1I|ms2i6A 1.09E-16 0.036751829 SLY2
Slycopersicum_tR167 Ala-TGC 26 G m1G 1.05E-19 0.002154531 SLY1
Slycopersicum_tR167 Ala-TGC 58 A m1A|m1I|ms2i6A 2.10E-67 5.88E-05 SLY1
Slycopersicum_tR170 Ser-GCT 67 A m1A|m1I|ms2i6A 3.95E-200 5.01E-20 SLY1
Slycopersicum_tR170 Ser-GCT 67 A m1A|m1I|ms2i6A 7.76E-156 5.23E-15 SLY2
Slycopersicum_tR170 Ser-GCT 67 A m1A|m1I|ms2i6A 8.69E-299 1.17E-21 SLY3
Slycopersicum_tR173 Glu-CTC 58 A m1A|m1I|ms2i6A 2.29E-125 4.84E-08 SLY2
Slycopersicum_tR173 Glu-CTC 58 A m1A|m1I|ms2i6A 1.49E-127 5.99E-11 SLY3
Slycopersicum_tR176 Ala-TGC 58 A m1A|m1I|ms2i6A 6.00E-47 0.012968286 SLY3
Slycopersicum_tR178 His-GTG 57 A m1A|m1I|ms2i6A 4.00E-08 0.010612772 SLY2
Slycopersicum_tR181 Glu-TTC 58 A m1A|m1I|ms2i6A 1.29E-141 0.003076326 SLY2
Slycopersicum_tR181 Glu-TTC 58 A m1A|m1I|ms2i6A 1.52E-133 7.05E-12 SLY3
Slycopersicum_tR182 Arg-TCG 59 A m1A|m1I|ms2i6A 3.84E-121 0.003046197 SLY1
Slycopersicum_tR182 Arg-TCG 59 A m1A|m1I|ms2i6A 2.77E-154 0.028720087 SLY2
Slycopersicum_tR185 Cys-GCA 36 G m1G 1.03E-26 6.57E-10 SLY2
Slycopersicum_tR185 Cys-GCA 36 G m1G 5.40E-23 4.58E-06 SLY3
Slycopersicum_tR189 Val-AAC 59 A m1A|m1I|ms2i6A 3.87E-87 1.64E-05 SLY1
Slycopersicum_tR189 Val-AAC 59 A m1A|m1I|ms2i6A 2.27E-116 0.030795522 SLY3
Slycopersicum_tR19 Arg-CCT 20 T D 3.08E-23 8.38E-08 SLY2
Slycopersicum_tR19 Arg-CCT 20 T D 2.48E-25 7.88E-09 SLY3
Slycopersicum_tR19 Arg-CCT 20 T Y 7.31E-14 0.027400783 SLY1
Slycopersicum_tR19 Arg-CCT 58 A i6A|t6A 9.46E-49 0.018861899 SLY1
Slycopersicum_tR19 Arg-CCT 58 A i6A|t6A 1.16E-43 1.17E-06 SLY2
Slycopersicum_tR19 Arg-CCT 58 A i6A|t6A 3.28E-50 0.001440721 SLY3
Slycopersicum_tR192 Leu-AAG 66 A i6A|t6A 2.37E-24 6.25E-06 SLY2
Slycopersicum_tR192 Leu-AAG 66 A i6A|t6A 3.47E-43 4.69E-08 SLY3
Slycopersicum_tR193 Asp-GTC 57 A m1A|m1I|ms2i6A 1.76E-110 0.000429426 SLY1
Slycopersicum_tR197 Ala-TGC 26 G m1G 4.65E-47 0.012566894 SLY1
Slycopersicum_tR199 Ala-TGC 58 A m1A|m1I|ms2i6A 1.51E-69 0.00259691 SLY2
Slycopersicum_tR199 Ala-TGC 58 A m1A|m1I|ms2i6A 6.48E-35 0.004155193 SLY3
Slycopersicum_tR201 Gly-TCC 57 A m1A|m1I|ms2i6A 0 1.00E-17 SLY1
Slycopersicum_tR201 Gly-TCC 57 A m1A|m1I|ms2i6A 0 4.58E-14 SLY2
Slycopersicum_tR201 Gly-TCC 57 A m1A|m1I|ms2i6A 0 3.53E-20 SLY3
Slycopersicum_tR215 Val-AAC 59 A m1A|m1I|ms2i6A 1.27E-73 0.00656915 SLY1
Slycopersicum_tR215 Val-AAC 59 A m1A|m1I|ms2i6A 4.75E-87 0.01279861 SLY2
Slycopersicum_tR215 Val-AAC 59 A m1A|m1I|ms2i6A 2.95E-113 0.018541238 SLY3
Slycopersicum_tR216 Arg-CCG 58 A m1A|m1I|ms2i6A 2.92E-36 0.013154523 SLY1
Slycopersicum_tR216 Arg-CCG 58 A m1A|m1I|ms2i6A 1.35E-52 0.004748349 SLY3
Slycopersicum_tR223 Val-TAC 58 A m1A|m1I|ms2i6A 1.11E-32 1.64E-06 SLY1
Slycopersicum_tR223 Val-TAC 58 A m1A|m1I|ms2i6A 9.13E-27 0.001488302 SLY2
Slycopersicum_tR223 Val-TAC 58 A m1A|m1I|ms2i6A 8.99E-35 0.001072491 SLY3
Slycopersicum_tR23 Ser-CGA 67 A m1A|m1I|ms2i6A 6.26E-78 2.16E-11 SLY1
Slycopersicum_tR23 Ser-CGA 67 A m1A|m1I|ms2i6A 1.96E-162 7.28E-18 SLY2
Slycopersicum_tR23 Ser-CGA 67 A m1A|m1I|ms2i6A 7.44E-298 3.80E-56 SLY3
Slycopersicum_tR230 Cys-GCA 36 G m1G 4.46E-21 0.000194408 SLY2
Slycopersicum_tR230 Cys-GCA 36 G m1G 1.10E-15 0.00265317 SLY3
Slycopersicum_tR232 Asp-GTC 57 A i6A|t6A 1.81E-231 2.54E-48 SLY1
Slycopersicum_tR232 Asp-GTC 57 A m1A|m1I|ms2i6A 2.57E-137 6.48E-18 SLY2
Slycopersicum_tR232 Asp-GTC 57 A m1A|m1I|ms2i6A 6.73E-44 3.12E-15 SLY3
Slycopersicum_tR234 Val-AAC 59 A m1A|m1I|ms2i6A 8.76E-121 0.000752391 SLY1
Slycopersicum_tR234 Val-AAC 59 A m1A|m1I|ms2i6A 1.51E-69 0.00259691 SLY2
Slycopersicum_tR235 Glu-CTC 58 A m1A|m1I|ms2i6A 5.16E-131 0.020098818 SLY2
Slycopersicum_tR235 Glu-CTC 58 A m1A|m1I|ms2i6A 1.23E-139 1.03E-05 SLY3
Slycopersicum_tR239 Arg-CCT 20 T Y 1.18E-61 0.022547968 SLY1
Slycopersicum_tR239 Arg-CCT 20 T Y 2.61E-73 8.38E-08 SLY2
Slycopersicum_tR239 Arg-CCT 20 T Y 2.63E-85 7.39E-13 SLY3
Slycopersicum_tR239 Arg-CCT 58 A i6A|t6A 9.17E-27 8.57E-09 SLY1
Slycopersicum_tR24 Ala-CGC 26 G m1G 3.27E-09 0.032048293 SLY2
Slycopersicum_tR249 Asp-GTC 57 A m1A|m1I|ms2i6A 0 2.93E-94 SLY1
Slycopersicum_tR249 Asp-GTC 57 A m1A|m1I|ms2i6A 0 1.14E-55 SLY2
Slycopersicum_tR249 Asp-GTC 57 A m1A|m1I|ms2i6A 1.34E-232 8.32E-23 SLY3
Slycopersicum_tR25 Glu-CTC 58 A m1A|m1I|ms2i6A 2.15E-24 0.028675353 SLY1
Slycopersicum_tR25 Glu-CTC 58 A m1A|m1I|ms2i6A 1.97E-56 0.017340249 SLY2
Slycopersicum_tR26 Ser-GCT 67 A m1A|m1I|ms2i6A 4.68E-48 1.60E-07 SLY1
Slycopersicum_tR26 Ser-GCT 67 A m1A|m1I|ms2i6A 5.38E-42 0.003304403 SLY2
Slycopersicum_tR26 Ser-GCT 67 A m1A|m1I|ms2i6A 4.60E-49 0.000526344 SLY3
Slycopersicum_tR260 Val-AAC 59 A m1A|m1I|ms2i6A 6.88E-22 0.019543801 SLY1
Slycopersicum_tR260 Val-AAC 59 A m1A|m1I|ms2i6A 1.03E-22 0.008630095 SLY3
Slycopersicum_tR264 Leu-CAA 69 A m1A|m1I|ms2i6A 7.08E-34 0.001488302 SLY2
Slycopersicum_tR264 Leu-CAA 69 A m1A|m1I|ms2i6A 1.47E-42 2.18E-08 SLY3
Slycopersicum_tR267 Ala-AGC 26 G m1G 4.70E-48 2.95E-12 SLY1
Slycopersicum_tR267 Ala-AGC 26 G m1G 1.03E-15 0.010612772 SLY2
Slycopersicum_tR267 Ala-AGC 26 G m1G 4.06E-16 0.019800771 SLY3
Slycopersicum_tR267 Ala-AGC 58 A m1A|m1I|ms2i6A 5.51E-97 0.000202958 SLY3
Slycopersicum_tR271 Arg-ACG 58 A m1A|m1I|ms2i6A 8.29E-37 0.00421995 SLY1
Slycopersicum_tR271 Arg-ACG 58 A m1A|m1I|ms2i6A 7.93E-38 0.005469772 SLY3
Slycopersicum_tR272 Val-TAC 9 G m1G 2.17E-18 0.004431598 SLY3
Slycopersicum_tR272 Val-TAC 58 A m1A|m1I|ms2i6A 4.48E-26 0.002741154 SLY2
Slycopersicum_tR272 Val-TAC 58 A m1A|m1I|ms2i6A 1.85E-33 2.11E-06 SLY3
Slycopersicum_tR273 Met-CAT 57 A m1A|m1I|ms2i6A 1.44E-74 0.00019303 SLY1
Slycopersicum_tR273 Met-CAT 57 A m1A|m1I|ms2i6A 2.89E-107 4.85E-13 SLY2
Slycopersicum_tR273 Met-CAT 57 A m1A|m1I|ms2i6A 1.22E-108 1.05E-10 SLY3
Slycopersicum_tR274 Ala-AGC 26 G m1G 3.39E-42 1.35E-09 SLY1
Slycopersicum_tR274 Ala-AGC 26 G m1G 3.16E-20 0.011105324 SLY3
Slycopersicum_tR274 Ala-AGC 58 A m1A|m1I|ms2i6A 3.60E-32 0.002998272 SLY3
Slycopersicum_tR276 Ser-TGA 67 A m1A|m1I|ms2i6A 4.44E-57 0.006286232 SLY1
Slycopersicum_tR276 Ser-TGA 67 A m1A|m1I|ms2i6A 5.09E-67 0.013276464 SLY2
Slycopersicum_tR276 Ser-TGA 67 A m1A|m1I|ms2i6A 5.95E-113 2.00E-11 SLY3
Slycopersicum_tR29 Lys-TTT 57 A m1A|m1I|ms2i6A 3.69E-187 5.15E-05 SLY1
Slycopersicum_tR29 Lys-TTT 57 A m1A|m1I|ms2i6A 1.05E-97 2.88E-07 SLY2
Slycopersicum_tR29 Lys-TTT 57 A m1A|m1I|ms2i6A 8.14E-77 0.013147608 SLY3
Slycopersicum_tR3 Leu-CAA 69 A i6A|t6A 1.39E-24 8.38E-05 SLY1
Slycopersicum_tR3 Leu-CAA 69 A m1A|m1I|ms2i6A 1.27E-41 0.006600642 SLY2
Slycopersicum_tR3 Leu-CAA 69 A m1A|m1I|ms2i6A 8.08E-34 0.000202958 SLY3
Slycopersicum_tR32 Gln-CTG 57 A i6A|t6A 1.41E-39 5.15E-05 SLY1
Slycopersicum_tR32 Gln-CTG 57 A m1A|m1I|ms2i6A 1.84E-38 5.88E-11 SLY2
Slycopersicum_tR32 Gln-CTG 57 A m1A|m1I|ms2i6A 5.13E-39 2.45E-08 SLY3
Slycopersicum_tR39 Val-AAC 59 A m1A|m1I|ms2i6A 6.91E-114 0.024284084 SLY1
Slycopersicum_tR4 Asp-GTC 57 A m1A|m1I|ms2i6A 1.18E-89 3.93E-09 SLY1
Slycopersicum_tR4 Asp-GTC 57 A m1A|m1I|ms2i6A 6.66E-45 0.032987787 SLY2
Slycopersicum_tR4 Asp-GTC 57 A m1A|m1I|ms2i6A 1.66E-37 0.042827309 SLY3
Slycopersicum_tR45 Lys-TTT 57 A i6A|t6A 1.77E-28 1.21E-12 SLY3
Slycopersicum_tR47 Arg-CCT 20 T Y 3.93E-82 4.33E-07 SLY1
Slycopersicum_tR47 Arg-CCT 20 T Y 2.07E-83 4.12E-19 SLY2
Slycopersicum_tR47 Arg-CCT 20 T Y 1.64E-100 1.02E-21 SLY3
Slycopersicum_tR47 Arg-CCT 58 A i6A|t6A 4.82E-51 5.36E-08 SLY1
Slycopersicum_tR47 Arg-CCT 58 A i6A|t6A 4.49E-60 1.55E-10 SLY2
Slycopersicum_tR47 Arg-CCT 58 A i6A|t6A 1.78E-31 1.32E-08 SLY3
Slycopersicum_tR51 Glu-CTC 58 A m1A|m1I|ms2i6A 1.07E-84 0.009380028 SLY1
Slycopersicum_tR51 Glu-CTC 58 A m1A|m1I|ms2i6A 2.40E-130 0.036751829 SLY2
Slycopersicum_tR51 Glu-CTC 58 A m1A|m1I|ms2i6A 2.14E-149 2.11E-06 SLY3
Slycopersicum_tR52 Lys-TTT 57 A m1A|m1I|ms2i6A 3.07E-199 6.88E-15 SLY1
Slycopersicum_tR52 Lys-TTT 57 A m1A|m1I|ms2i6A 5.63E-108 0.008592197 SLY2
Slycopersicum_tR52 Lys-TTT 57 A m1A|m1I|ms2i6A 3.66E-63 1.76E-08 SLY3
Slycopersicum_tR53 Arg-ACG 21 T Y 1.25E-89 9.48E-07 SLY1
Slycopersicum_tR53 Arg-ACG 21 T Y 1.13E-32 0.000234079 SLY2
Slycopersicum_tR55 Asp-GTC 57 A i6A|t6A 1.08E-12 0.008583675 SLY1
Slycopersicum_tR56 Tyr-GTA 69 A m1A|m1I|ms2i6A 2.48E-13 0.015147539 SLY1
Slycopersicum_tR57 Val-AAC 59 A m1A|m1I|ms2i6A 2.90E-29 2.02E-06 SLY3
Slycopersicum_tR59 Gly-TCC 57 A m1A|m1I|ms2i6A 0 9.15E-23 SLY1
Slycopersicum_tR59 Gly-TCC 57 A m1A|m1I|ms2i6A 0 1.40E-24 SLY2
Slycopersicum_tR59 Gly-TCC 57 A m1A|m1I|ms2i6A 0 9.22E-12 SLY3
Slycopersicum_tR64 Glu-CTC 58 A m1A|m1I|ms2i6A 2.87E-84 0.022931492 SLY1
Slycopersicum_tR64 Glu-CTC 58 A m1A|m1I|ms2i6A 2.62E-138 0.000184462 SLY2
Slycopersicum_tR64 Glu-CTC 58 A m1A|m1I|ms2i6A 2.06E-148 2.02E-09 SLY3
Slycopersicum_tR66 Ser-CGA 67 A m1A|m1I|ms2i6A 5.73E-270 2.07E-31 SLY1
Slycopersicum_tR66 Ser-CGA 67 A m1A|m1I|ms2i6A 2.42011195624524e-314 8.20E-59 SLY2
Slycopersicum_tR66 Ser-CGA 67 A m1A|m1I|ms2i6A 0 1.88E-50 SLY3
Slycopersicum_tR67 Ala-AGC 26 G m1G 1.56E-48 2.52E-05 SLY1
Slycopersicum_tR67 Ala-AGC 26 G m1G 1.79E-09 0.016286432 SLY2
Slycopersicum_tR67 Ala-AGC 26 G m1G 3.10E-23 0.000202958 SLY3
Slycopersicum_tR67 Ala-AGC 58 A i6A|t6A 3.40E-16 0.008583675 SLY1
Slycopersicum_tR69 Glu-CTC 58 A m1A|m1I|ms2i6A 1.41E-30 1.76E-09 SLY2
Slycopersicum_tR69 Glu-CTC 58 A m1A|m1I|ms2i6A 4.48E-24 6.62E-05 SLY3
Slycopersicum_tR79 Lys-TTT 56 A m1A|m1I|ms2i6A 2.53E-147 3.37E-16 SLY1
Slycopersicum_tR79 Lys-TTT 56 A m1A|m1I|ms2i6A 5.31E-76 0.000207062 SLY2
Slycopersicum_tR79 Lys-TTT 56 A m1A|m1I|ms2i6A 7.23E-60 4.01E-06 SLY3
Slycopersicum_tR80 Glu-CTC 58 A m1A|m1I|ms2i6A 2.62E-138 0.002923365 SLY2
Slycopersicum_tR80 Glu-CTC 58 A m1A|m1I|ms2i6A 1.17E-150 1.32E-06 SLY3
Slycopersicum_tR84 Val-AAC 59 A i6A|t6A 1.21E-20 0.002041992 SLY1
Slycopersicum_tR84 Val-AAC 59 A i6A|t6A 2.24E-38 6.62E-05 SLY3
Slycopersicum_tR85 Gly-TCC 57 A m1A|m1I|ms2i6A 0 1.19E-21 SLY1
Slycopersicum_tR85 Gly-TCC 57 A m1A|m1I|ms2i6A 0 2.31E-18 SLY2
Slycopersicum_tR85 Gly-TCC 57 A m1A|m1I|ms2i6A 0 2.13E-14 SLY3
Slycopersicum_tR89 Ala-TGC 58 A m1A|m1I|ms2i6A 2.47E-64 2.75E-05 SLY2
Slycopersicum_tR89 Ala-TGC 58 A m1A|m1I|ms2i6A 2.00E-31 0.049364249 SLY3
Slycopersicum_tR90 Leu-CAA 69 A i6A|t6A 2.49E-20 0.000615847 SLY1
Slycopersicum_tR90 Leu-CAA 69 A i6A|t6A 7.17E-24 0.002447292 SLY3
Slycopersicum_tR90 Leu-CAA 69 A m1A|m1I|ms2i6A 2.20E-14 0.023842438 SLY2
Slycopersicum_tR98 Leu-CAA 69 A m1A|m1I|ms2i6A 7.90E-38 0.007389789 SLY2
Slycopersicum_tR98 Leu-CAA 69 A m1A|m1I|ms2i6A 3.10E-23 2.35E-08 SLY3