Populus trichocarpa mRNA modification sites

Chr Position Strand Ref_nt Pred_mod H1_Pval H4_Pval Gene Feature Data_type Data_Acc
Chr01 256802 + A i6A|t6A 1.19E-88 0.001325281 Potri.001G004100.1.v3.0 mRNA mRNAseq SRR2962391
Chr01 12723314 + A i6A|t6A 4.75E-76 0.002062461 Potri.001G154200.1.v3.0.CDS.1 exon mRNAseq SRR3473007
Chr01 35077476 + A i6A|t6A 1.22E-125 3.64E-25 Potri.001G345300.1.v3.0 mRNA mRNAseq SRR2962391
Chr02 11156103 - C m1G 3.92E-39 3.65E-06 Potri.002G149900.1.v3.0 mRNA mRNAseq SRR3473006
Chr02 16599615 - T m1A|m1I|ms2i6A 1.89E-73 0.018483715 Potri.002G203500.v3.0 mRNA mRNAseq SRR2962391
Chr02 23655125 - C m1G 1.60E-38 8.90E-06 Potri.002G244800.2.v3.0 mRNA mRNAseq SRR3208062
Chr02 23660206 - G m3C 4.75E-27 0.02621862 Potri.002G244800.2.v3.0.CDS.1 exon mRNAseq SRR3207873
Chr02 23660206 - G m3C 3.27E-48 3.23E-05 Potri.002G244800.2.v3.0 mRNA mRNAseq SRR3207918
Chr02 23660206 - G m3C 1.90E-26 0.01140787 Potri.002G244800.v3.0 mRNA mRNAseq SRR3208061
Chr02 23660206 - G m3C 5.51E-32 0.000606464 Potri.002G244800.1.v3.0 mRNA mRNAseq SRR3208062
Chr02 23663923 - C m1G 2.11E-30 0.000171884 Potri.002G245000.1.v3.0.3UTR.1 3UTR mRNAseq SRR3207920
Chr02 23663923 - C m1G 1.05E-54 1.23E-08 Potri.002G245000.v3.0 mRNA mRNAseq SRR3208061
Chr02 23663923 - C m1G 9.16E-70 2.04E-09 Potri.002G245000.1.v3.0 mRNA mRNAseq SRR3208062
Chr03 12533560 + C m3C 1.08E-28 0.025240429 Potri.003G099000.1.v3.0.CDS.1 exon mRNAseq SRR2962391
Chr05 287430 - C m1G 4.87E-92 2.72E-07 Potri.005G004900.v3.0 mRNA mRNAseq SRR3473011
Chr05 9968923 - T m1A|m1I|ms2i6A 2.31E-62 3.20E-07 Potri.005G126500.v3.0 mRNA mRNAseq SRR3473011
Chr05 10691870 NA T Y 2.54E-43 2.39E-05 NA NA mRNAseq SRR3207872
Chr05 10691870 NA T Y 3.24E-136 1.36E-13 NA NA mRNAseq SRR3207918
Chr05 10691870 NA T Y 1.11E-134 1.28E-18 NA NA mRNAseq SRR3472999
Chr05 10795508 NA A m1A|m1I|ms2i6A 2.52E-125 6.65E-11 NA NA mRNAseq SRR3472999
Chr07 2687803 + C m3C 0 2.54E-05 Potri.007G034800.5.v3.0.3UTR.1 3UTR mRNAseq SRR3473011
Chr07 14884223 - C m2G|m22G 8.34E-193 0.006351922 Potri.007G136400.2.v3.0 mRNA mRNAseq SRR2962391
Chr07 15163402 - A D 1.48E-39 0.005538989 Potri.007G140900.1.v3.0 mRNA mRNAseq SRR2962391
Chr08 19157636 NA T Y 8.20E-174 5.49E-06 NA NA mRNAseq SRR3208062
Chr08 19186118 NA T Y 3.62E-133 0.000504422 NA NA mRNAseq SRR3208061
Chr08 19186118 NA T Y 8.47E-174 0.005179023 NA NA mRNAseq SRR3208062
Chr10 12842045 - C m1G 3.78E-33 0.000997027 Potri.010G109100.2.v3.0 mRNA mRNAseq SRR2962391
Chr11 7197375 NA A i6A|t6A 0 3.44E-28 NA NA mRNAseq SRR3472994
Chr11 7197375 NA A i6A|t6A 3.20E-226 1.94E-13 NA NA mRNAseq SRR3472999
Chr11 7197375 NA A m1A|m1I|ms2i6A 1.95E-207 9.43E-07 NA NA mRNAseq SRR3472995
Chr11 13013453 + T Y 2.69E-39 7.69E-06 Potri.011G106700.1.v3.0 mRNA mRNAseq SRR3473007
Chr11 18043410 + T D 8.78E-215 0.013713749 Potri.011G162900.1.v3.0 mRNA mRNAseq SRR952889
Chr11 18043410 + T D 0 1.10E-08 Potri.011G162900.1.v3.0.CDS.1 exon mRNAseq SRR952892
Chr11 18043410 + T D 0 2.02E-12 Potri.011G162900.v3.0 mRNA mRNAseq SRR952894
Chr12 5082399 - A Y 2.90E-24 0.000161916 Potri.012G051800.1.v3.0.5UTR.1 5UTR mRNAseq SRR2962391
Chr13 7290712 + T Y 8.53E-32 0.005912967 Potri.013G081700.2.v3.0 mRNA mRNAseq SRR2962391
Chr13 14793630 NA A i6A|t6A 4.12E-43 0.001201033 NA NA mRNAseq SRR3472994
Chr13 14793630 NA A i6A|t6A 6.99E-38 0.012005293 NA NA mRNAseq SRR3472995
Chr13 14794162 + C m3C 8.99E-52 9.43E-07 Potri.013G140100.v3.0 mRNA mRNAseq SRR3472994
Chr13 14794162 + C m3C 5.45E-46 0.002689066 Potri.013G140100.1.v3.0 mRNA mRNAseq SRR3472999
Chr14 4235242 + C m3C 1.82E-51 0.000161916 Potri.014G053700.4.v3.0 mRNA mRNAseq SRR2962391
Chr14 9720408 NA A m1A|m1I|ms2i6A 3.86E-126 1.06E-28 NA NA mRNAseq SRR1165054
Chr14 16395616 NA A i6A|t6A 3.16E-64 2.33E-06 NA NA mRNAseq SRR3472999
Chr17 4289116 + A m1A|m1I|ms2i6A 0 0.002645131 Potri.017G051100.v3.0 mRNA mRNAseq SRR3472997
Chr19 14000697 - C m1G 8.77E-49 0.000161916 Potri.019G110800.v3.0 mRNA mRNAseq SRR2962391
scaffold_346 48469 NA T Y 6.43E-171 9.13E-06 NA NA mRNAseq SRR3208062