Citrus sinensis mRNA modification sites

Chr Position Strand Ref_nt Pred_mod H1_Pval H4_Pval Gene Feature Data_type Data_Acc
scaffold00001 151281 + T D 1.49E-16 0.047280785 orange1.1g006722m.v1.1 mRNA Degradome GSM1138346
scaffold00002 787472 + C m3C 7.19E-35 0.028351704 orange1.1g033354m.v1.1.CDS.1 exon Degradome GSM1138347
scaffold00002 1637069 + G m1G 1.86E-22 0.016970183 orange1.1g009270m.v1.1 mRNA Degradome GSM1138345
scaffold00003 3541370 + G m2G|m22G 2.89E-27 0.012607485 orange1.1g030727m.v1.1 mRNA Degradome GSM1138345
scaffold00004 1707179 + T D 1.65E-55 0.010044256 orange1.1g020726m.v1.1 mRNA Degradome GSM1138345
scaffold00018 1187031 - G m3C 2.35E-85 5.70E-10 orange1.1g035463m.v1.1 mRNA Degradome GSM1138347
scaffold00021 750232 + C m3C 1.54E-55 2.92E-12 orange1.1g021798m.v1.1.CDS.3 exon Degradome GSM1138347
scaffold00023 1033063 - G m3C 2.47E-35 0.016834483 orange1.1g026315m.v1.1.CDS.3 exon Degradome GSM1138345
scaffold00023 1033063 - G m3C 2.99E-155 2.35E-08 orange1.1g026315m.v1.1.CDS.3 exon Degradome GSM1138346
scaffold00032 450884 + A m1A|m1I|ms2i6A 3.96E-170 4.98E-17 orange1.1g045264m.g.v1.1 mRNA Degradome GSM1138347
scaffold00043 392155 + T Y 5.60E-85 2.47E-06 orange1.1g041279m.g.v1.1 mRNA mRNAseq SRR4050294
scaffold00043 392155 + T Y 8.34E-82 0.001384341 orange1.1g041279m.v1.1.CDS.2 exon mRNAseq SRR4050295
scaffold00061 96270 + T D 1.73E-24 0.012607485 orange1.1g011926m.v1.1.CDS.4 exon Degradome GSM1138345
scaffold00061 231618 - G m3C 3.97E-75 1.04E-16 orange1.1g007982m.g.v1.1 mRNA Degradome GSM1138347
scaffold00062 489549 - G m3C 1.66E-79 0.000113766 orange1.1g012543m.v1.1.CDS.2 exon Degradome GSM1138347
scaffold00112 392927 + A m1A|m1I|ms2i6A 3.20E-27 0.001399394 orange1.1g034843m.g.v1.1 mRNA mRNAseq SRR4050292
scaffold00163 21397 - G m3C 1.32E-235 5.40E-42 orange1.1g017269m.v1.1.5UTR.1 5UTR Degradome GSM1138347
scaffold00193 5239 - T i6A|t6A 0 1.25E-41 orange1.1g020245m.g.v1.1 mRNA mRNAseq SRR4050294
scaffold00193 5239 - T i6A|t6A 0 3.91E-64 orange1.1g020245m.v1.1 mRNA mRNAseq SRR4050295
scaffold00193 5645 - A Y 0 9.96E-83 orange1.1g020245m.v1.1 mRNA mRNAseq SRR4050294
scaffold00193 5645 - A Y 0 2.16E-71 orange1.1g020245m.g.v1.1 mRNA mRNAseq SRR4050295
scaffold00270 172768 - G m3C 0 1.53E-48 orange1.1g013237m.g.v1.1 mRNA Degradome GSM1138347
scaffold00280 114014 - G m3C 1.19E-27 0.012028704 orange1.1g021241m.v1.1 mRNA Degradome GSM1138346
scaffold00354 155036 - T i6A|t6A 1.14E-30 0.003959932 orange1.1g019334m.g.v1.1 mRNA Degradome GSM1138346
scaffold00354 155052 - A Y 0 1.03E-16 orange1.1g019334m.g.v1.1 mRNA Degradome GSM1138345
scaffold00547 100678 - C m1G 9.82E-33 0.036029427 orange1.1g048689m.v1.1.CDS.1 exon mRNAseq SRR4050292
scaffold00564 73526 + C m3C 8.01E-31 0.04505508 orange1.1g015862m.v1.1.CDS.3 exon mRNAseq SRR4050295
scaffold00564 75510 + A i6A|t6A 8.34E-143 1.07E-08 orange1.1g015862m.v1.1 mRNA mRNAseq SRR4050294
scaffold00564 75510 + A i6A|t6A 2.53E-114 2.03E-15 orange1.1g015862m.g.v1.1 mRNA mRNAseq SRR4050295
scaffold01098 23793 + A i6A|t6A 7.42E-31 0.000212008 orange1.1g045960m.v1.1.CDS.3 exon mRNAseq SRR4050293
scaffold01522 19502 + C m3C 1.19E-35 0.007929296 orange1.1g002187m.g.v1.1 mRNA mRNAseq SRR4050295
scaffold01522 19502 + C m3C 2.66E-54 4.47E-06 orange1.1g002187m.v1.1.CDS.1 exon mRNAseq SRR4050293
scaffold01950 1215 + T Y 1.29E-220 1.00E-23 orange1.1g036658m.g.v1.1 mRNA mRNAseq SRR4050292
scaffold01950 1215 + T Y 1.83E-122 5.48E-06 orange1.1g036658m.g.v1.1 mRNA mRNAseq SRR4050293
scaffold01950 1215 + T Y 1.01E-173 7.52E-14 orange1.1g036658m.g.v1.1 mRNA mRNAseq SRR4050294
scaffold01950 1215 + T Y 5.01E-160 1.10E-18 orange1.1g036658m.v1.1 mRNA mRNAseq SRR4050295
scaffold03685 847 NA G m1G 2.26E-47 0.005277423 NA NA mRNAseq SRR4050292
scaffold04536 802 - A D 0 3.85E-73 orange1.1g023384m.v1.1 mRNA mRNAseq SRR4050292
scaffold04536 802 - A D 0 1.45E-65 orange1.1g023384m.g.v1.1 mRNA mRNAseq SRR4050293
scaffold04536 802 - A D 2.51924072814452e-320 2.37E-24 orange1.1g023384m.v1.1 mRNA mRNAseq SRR4050294
scaffold04536 802 - A D 2.81E-295 9.75E-24 orange1.1g023384m.v1.1 mRNA mRNAseq SRR4050295
scaffold05643 3240 - C m1G 1.79E-53 0.003535751 orange1.1g048439m.v1.1 mRNA mRNAseq SRR4050292
scaffold05643 3240 - C m1G 4.75E-57 0.000758032 orange1.1g048439m.v1.1 mRNA mRNAseq SRR4050293
scaffold05643 3240 - C m1G 3.49E-36 0.039097118 orange1.1g048439m.v1.1 mRNA mRNAseq SRR4050295
scaffold06582 1967 NA T D 3.72E-241 3.03E-31 NA NA mRNAseq SRR4050292
scaffold06582 1967 NA T D 3.70E-230 3.57E-21 NA NA mRNAseq SRR4050293
scaffold06582 1967 NA T D 1.13E-91 2.14E-09 NA NA mRNAseq SRR4050294
scaffold06582 1967 NA T D 3.43E-104 2.56E-19 NA NA mRNAseq SRR4050295
scaffold11354 2094 NA C m3C 1.80E-31 0.003016646 NA NA mRNAseq SRR4050293
scaffold12515 582 - G m3C 4.59E-36 0.000184169 orange1.1g037705m.v1.1.CDS.1 exon mRNAseq SRR4050292