The genome of black cottonwood tree (Populus trichocarpa) was originally published on Science in 2006 (ref). The updated poplar genome is available on Phytozome which contains ~370 megabases and 41,377 protein coding genes on 19 chromosomes. P. trichocarpa is characteristic of whole genome duplication.


CDS target prediction

strict (score 3):           all_targets,   conserved_targets(ortho),  conserved_targets(homo)
moderate (score 4) :   all_targets,   conserved_targets(ortho),  conserved_targets(homo)
loose (score 5) :          all_targets,   conserved_targets
(ortho),  conserved_targets(homo)


intergenic target prediction

strict (score 3):           all_targets,   conserved_targets
moderate (score 4) :   all_targets,   conserved_targets
loose (score 5) :          all_targets,   conserved_targets


intergenic eTM prediction

strict:  all_interg_eTMs,   conserved_interg_eTMs
looseall_interg_eTMs,   conserved_interg_eTMs