Rice (Oryza sativa) is an important cereal and model monocot. Its sequenced genome was originally published on Science in 2002 (ref1, ref2). The current version of the rice genome (Oryza sativa L. ssp. japonica) contains ~370 megabases with 40,577 non-transposon related genes on 12 chromosomes.

CDS target prediction

strict (score 3):           all_targets,   conserved_targets(ortho),  conserved_targets(homo)
moderate (score 4) :   all_targets,   conserved_targets(ortho),  conserved_targets(homo)
loose (score 5) :          all_targets,   conserved_targets(ortho),  conserved_targets(homo)

CDS targets (degradome)

intergenic target prediction

strict (score 3):            all_targets,   conserved_targets
moderate (score 4) :   all_targets,   conserved_targets
loose (score 5) :         all_targets,   conserved_targets

intergenic eTM prediction

strict:  all_interg_eTMs,   conserved_interg_eTMs
loose: all_interg_eTMs,   conserved_interg_eTMs

Noncanonical CDS targets (degradome)

seedling                 (GEO sample: GSM434596)
inflorescence         (GEO sample: GSM455939)