Barley (Hordeum vulgare) is an important crop in food industry and serves as a source of beer production. Barley genome was sequenced by the International Barley Genome Sequencing Consortium, and was published on Nature in 2012 (ref). Barley has a large haploid genome of ~5.1 gigabases including 26,159 high-confidence genes.


CDS target prediction

strict (score 3):           all_targets,   conserved_targets(ortho),  conserved_targets(homo)
moderate (score 4) :   all_targets,   conserved_targets(ortho),  conserved_targets(homo)
loose (score 5) :          all_targets,   conserved_targets
(ortho),  conserved_targets(homo)


CDS targets (degradome)

grain_5DPA       (GEO sample: GSM949160)
grain_10DPA     (GEO sample: GSM949161)
grain_15DPA     (GEO sample: GSM949162)

intergenic target prediction

strict (score 3):           all_targets,   conserved_targets
moderate (score 4) :   all_targets,   conserved_targets
loose (score 5) :          all_targets,   conserved_targets


intergenic eTM prediction

strict:  all_interg_eTMs,   conserved_interg_eTMs
loose: all_interg_eTMs,   conserved_interg_eTMs


Noncanonical CDS targets (degradome)

grain_10DPA    (GEO sample: GSM949161)
grain_15DPA    (GEO sample: GSM949162)