The Brachypodium distachyon genome was published on Nature in 2010 (ref). Brachypodium belongs to the Pooideae, which includes important crops such as wheat, barley, rye, and oats. The Brachypodium genome is ~272 megabases with 25,532 protein coding genes on five chromosomes.


CDS target prediction

strict (score 3):           all_targets,   conserved_targets(ortho),  conserved_targets(homo)
moderate (score 4) :   all_targets,   conserved_targets(ortho),  conserved_targets(homo)
loose (score 5) :          all_targets,   conserved_targets(ortho),  conserved_targets(homo)


CDS targets (degradome)

leaf           (GEO sample: GSM1266855)
panicle      (GEO sample: GSM1266857)
root            (GEO sample: GSM1266854)
stem           (GEO sample: GSM1266856)

intergenic target prediction

strict (score 3):           all_targets,   conserved_targets
moderate (score 4) :   all_targets,   conserved_targets
loose (score 5) :          all_targets,   conserved_targets


intergenic eTM prediction

strict:  all_interg_eTMs,   conserved_interg_eTMs
looseall_interg_eTMs,   conserved_interg_eTMs


Noncanonical CDS targets (degradome)

leaf              (GEO sample: GSM1266855)
panicle         (GEO sample: GSM1266857)
root               (GEO sample: GSM1266854)
stem              (GEO sample: GSM1266856)