Arabidopsis thaliana (mouse-ear cress) is a model species in plant biology. Arabidopsis is a member of Brassicaceae family that includes cabbage and radish. The Arabidopsis genome is approximately 120 megabases containing 27,416 protein coding genes, 4,827 pseudogenes and 1,359 ncRNAs (TAIR10 release).

CDS target prediction

strict (score 3):           all_targets,   conserved_targets(ortho),  conserved_targets(homo)
moderate (score 4) :   all_targets,   conserved_targets(ortho),  conserved_targets(homo)
loose (score 5) :          all_targets,   conserved_targets(ortho),  conserved_targets(homo)

CDS targets (degradome)

intergenic target prediction

strict (score 3):           all_targets,  conserved_targets
moderate (score 4) :   all_targets,  conserved_targets
loose (score 5) :          all_targets,  conserved_targets

intergenic targets (degradome)

wt_inflorescence             (GEO sample: GSM280226)
xrn4_inflorescence          (GEO sample: GSM280227)
young_leaf                       (GEO sample: GSM1330561)
mature_leaf                      (GEO sample: GSM1330562)

UTR targets (degradome)

5'UTR:   young_leaf       (GEO sample: GSM1330561)
5'UTR:   mature_leaf      (GEO sample: GSM1330562)
3'UTR:   young_leaf        (GEO sample: GSM1330561)
3'UTR:   mature_leaf       (GEO sample: GSM1330562)

intergenic eTM prediction

strict:  all_interg_eTMs,   conserved_interg_eTMs
loose: all_interg_eTMs,   conserved_interg_eTMs

Noncanonical CDS targets (degradome)

wt_inflorescence           (GEO sample: GSM280226)
xrn4_inflorescence        (GEO sample: GSM280227)
young_leaf                     (GEO sample: GSM1330561)
mature_leaf                    (GEO sample: GSM1330562)